RetrogeneDB ID: | retro_ggor_1039 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 14:30201469..30201928(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSGGOG00000015641 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.07 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GSSSPATAPHPLKM-FACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSRPLTSLVSS |
GSSS.ATAPH.LKM...C.KF.ST.SLVK.TSQLLS.PLSAVVLK.PE.LTDESLS.LAVS.PLTSL..S | |
Retrocopy | GSSSSATAPHLLKM<VTCFKFLSTSSLVKNTSQLLSHPLSAVVLK*PETLTDESLSNLAVSCPLTSLAHS |
Parental | RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLII-GYARNPSLKQQLFSYAILGFAL-SE |
RSFQT.AI.RDIDTA.KF.G.GAATV.VAGSGA....VF.SLI..G.ARNPSLKQQLFS.AI.GFAL... | |
Retrocopy | RSFQTRAIPRDIDTASKFTGVGAATVRVAGSGAETAIVFESLIM<GHARNPSLKQQLFSCAIPGFAL<PG |
Parental | AMGLFCLMVAFLILFAM |
AMGLFCLMVAFL.LFAM | |
Retrocopy | AMGLFCLMVAFLTLFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 116 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 115 .83 RPM |
SRP007412_heart | 0 .00 RPM | 147 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 140 .13 RPM |
SRP007412_liver | 0 .00 RPM | 117 .78 RPM |
SRP007412_testis | 0 .00 RPM | 62 .37 RPM |