RetrogeneDB ID: | retro_pabe_593 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:58324484..58324829(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G1 | ||
Ensembl ID: | ENSPPYG00000008909 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
Percent Identity: | 86.21 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFI |
MQT.GA..ISPAL..CCTRGLIRPVSASFLNSP.NSSKQPSYS..PLQVAR.EF.TSVVSRD.DTAAK.I | |
Retrocopy | MQT-GAQLISPALMCCCTRGLIRPVSASFLNSPENSSKQPSYSSSPLQVARQEF*TSVVSRDVDTAAKLI |
Parental | GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFA |
GAGAATV.VAGSGAG.GTVFGSLIIGYARNPSLKQQ.FSY.ILGFA | |
Retrocopy | GAGAATVSVAGSGAGTGTVFGSLIIGYARNPSLKQQFFSYVILGFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 42 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .31 RPM |
SRP007412_heart | 0 .00 RPM | 72 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 62 .55 RPM |
SRP007412_liver | 0 .00 RPM | 32 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_597 |
Pan troglodytes | retro_ptro_440 |
Gorilla gorilla | retro_ggor_528 |