RetrogeneDB ID: | retro_pabe_2353 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:141394722..141394956(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G1 | ||
Ensembl ID: | ENSPPYG00000008909 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
Percent Identity: | 71.79 % |
Parental protein coverage: | 57.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFI |
MQT.GAL..S.ALI.C.TR.L.R.VSASFLN.P.N.SKQ.SYS..PL.VAR.EFQTSVVS.DIDTA.KFI | |
Retrocopy | MQTLGALLVSQALICCSTRDLLRSVSASFLNRPNNLSKQLSYSSSPLHVAR*EFQTSVVSWDIDTAVKFI |
Parental | GAGAATVG |
.AGA.T.G | |
Retrocopy | DAGAITIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 42 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .31 RPM |
SRP007412_heart | 0 .00 RPM | 72 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 62 .55 RPM |
SRP007412_liver | 0 .03 RPM | 32 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2844 |
Pan troglodytes | retro_ptro_1926 |
Callithrix jacchus | retro_cjac_1549 |