RetrogeneDB ID: | retro_mmul_1751 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:16146758..16147015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSMMUG00000016805 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.37 % |
Parental protein coverage: | 65.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TIVCYHPSVDIPYEHTKPVPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEKLSK-MFFTTKHRWYP |
T..CYH.SVDIPYEHTKP...PD.VHNNEE..DQVLKTR.EEK.EH.E..PM...LSK..FFT..H..YP | |
Retrocopy | T*ACYHSSVDIPYEHTKPILQPDSVHNNEEIQDQVLKTRREEKREHFEQRPMRKQLSK<TFFTVTHCQYP |
Parental | HGQYHRRRTNLNPPKDR |
HGQY.R....L...KDR | |
Retrocopy | HGQY*RWCKKLDLLKDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 11 .99 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .01 RPM |
SRP007412_heart | 0 .00 RPM | 15 .02 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .31 RPM |
SRP007412_liver | 0 .00 RPM | 8 .31 RPM |
SRP007412_testis | 0 .00 RPM | 52 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2317 |