RetrogeneDB ID: | retro_rnor_1383 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:16878916..16879333(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl42 | ||
Ensembl ID: | ENSRNOG00000042740 | ||
Aliases: | Mrpl42, Mrps32 | ||
Description: | 28S ribosomal protein L42, mitochondrial [Source:RefSeq peptide;Acc:NP_001100252] |
Percent Identity: | 59.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAAAVKWAVSHRT-IWRHLF-PIQNGAISSARHKSTYSSLPDDYNCKVELALTSDGRTIVCYH-PSVDVP |
MAAAVKW..S.RT..W.H.F...QN...S...HKSTYSS..DDYNCK..L.L.SD..T.VCYH.PSV..P | |
Retrocopy | MAAAVKWVISKRT<FWMHFF<SFQNRVLSRVSHKSTYSSFLDDYNCKAKLTLPSDDSTLVCYH<PSVGIP |
Parental | YEHTQPIPHPDLLHNNEETHEQILRTKLEGNRKHLEQGPMIEQLSKVFFTTKHRWYPHGQYHRRRKKLNP |
..HT.PI..PDL.HN.EE.HE..L.TKL....K.L..GPMIEQLSKV..TTKH...PH...HRR.K...P | |
Retrocopy | HRHTKPILQPDLFHNDEEMHEYVLDTKLKEKSKQLVPGPMIEQLSKVILTTKHH*HPH-S*HRRDKEPDP |
Parental | PKDR |
.KDR | |
Retrocopy | LKDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .31 RPM |
SRP017611_liver | 0 .00 RPM | 10 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1756 |