RetrogeneDB ID: | retro_hsap_3844 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:47065722..47066013(-) | ||
Located in intron of: | ENSG00000232072 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000242552 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSG00000198015 | ||
Aliases: | MRPL42, L31MT, L42MT, MRP-L31, MRP-L42, MRP-S32, MRPL31, MRPS32, PTD007, RPML31, S32MT | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 57. % |
Parental protein coverage: | 67.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKV-EHLEEGPM-IEQLSK |
VEL.LTSDG.TIV....SVDI..EH.KP.P.PDPV..NEETH.QVLK.RL.......L..GP..IEQLSK | |
Retrocopy | VELFLTSDGSTIVSCTASVDIADEHIKPLPQPDPVRDNEETHAQVLKNRLXXXX>QYLKQGPR<IEQLSK |
Parental | MFFTTKHRWYPHGRY--HRCRKNLNPPKDR |
MFF.T...WY..G.Y..H...KN....KD. | |
Retrocopy | MFFITQY-WYRCGQYQSHSHGKNVDGLKDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 26 .40 RPM |
bodymap2_adrenal | 0 .00 RPM | 35 .88 RPM |
bodymap2_brain | 0 .02 RPM | 24 .66 RPM |
bodymap2_breast | 0 .00 RPM | 23 .85 RPM |
bodymap2_colon | 0 .00 RPM | 31 .92 RPM |
bodymap2_heart | 0 .00 RPM | 31 .31 RPM |
bodymap2_kidney | 0 .06 RPM | 53 .54 RPM |
bodymap2_liver | 0 .00 RPM | 24 .10 RPM |
bodymap2_lung | 0 .00 RPM | 29 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 32 .82 RPM |
bodymap2_ovary | 0 .08 RPM | 39 .34 RPM |
bodymap2_prostate | 0 .00 RPM | 36 .75 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 18 .35 RPM |
bodymap2_testis | 0 .00 RPM | 54 .73 RPM |
bodymap2_thyroid | 0 .00 RPM | 33 .75 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 32 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2589 |
Pongo abelii | retro_pabe_3054 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |