RetrogeneDB ID: | retro_opri_190 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_3445:119341..119692(+) | ||
Located in intron of: | ENSOPRG00000007085 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSOPRG00000010967 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 73.39 % |
Parental protein coverage: | 87.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KRVISNTAVWRHFSPTHELLYCVCRKSTYSSLPEDYKCKVELALTSDGRTIVCYHPSVDIPYEHTKPIPR |
.RVISNT..W.H.SPTH..LYCVC.KSTYS.LP.DY.CKVELALTSDGRTIV...P......EHTKPIPR | |
Retrocopy | QRVISNTTIWKHLSPTHGALYCVCHKSTYSPLPDDYNCKVELALTSDGRTIVITLPWIF--HEHTKPIPR |
Parental | PDPVLNNEETHDQVLKTRLQGKSEHLEQGPMVEQLSKMFFTTKHRWYPHGHYHR |
PDPVLNNEETHDQVLKTRLQGKSEHLEQGPM...L........H.WYPHGHY.R | |
Retrocopy | PDPVLNNEETHDQVLKTRLQGKSEHLEQGPM---LEQLYY--EHHWYPHGHYYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009832 | 1 retrocopy | |
Bos taurus | ENSBTAG00000002708 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000032825 | 4 retrocopies | |
Homo sapiens | ENSG00000198015 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000022760 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013779 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016805 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005699 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010928 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000010967 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000003791 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004833 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000022791 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000042740 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000030478 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000026544 | 12 retrocopies | |
Tarsius syrichta | ENSTSYG00000006370 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000003312 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007658 | 1 retrocopy |