RetrogeneDB ID: | retro_ocun_622 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:100577013..100577272(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSOCUG00000010928 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 66.29 % |
Parental protein coverage: | 61.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RTILKHLSPVQNGALYCVCH-KSTYSPLPDDYNCKVELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPV |
RTI.KHL.P..N.A.YC..H..S.YS.L.DD.N.KV.LALTSDG.T...YHPSVDIPYE..KPIP.P..V | |
Retrocopy | RTIWKHLFPFYNRASYCLYH<QSMYSYLLDDHNSKVGLALTSDGSTVA*YHPSVDIPYEYIKPIPQPYSV |
Parental | LNNE-ETHDQVLKTRLEEK |
.NNE...HDQVL.TRLEEK | |
Retrocopy | HNNE<MIHDQVLTTRLEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .12 RPM |
SRP017611_liver | 0 .00 RPM | 5 .78 RPM |