RetrogeneDB ID: | retro_pabe_3054 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:37061782..37062073(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSPPYG00000004833 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 57. % |
Parental protein coverage: | 67.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VELAVTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKV-EHLEEGPM-IEQLSK |
VEL..TSDG.T.V....SVDI..EH.KP.P.PDPVH.NEETH.QVLK.RL.......L..GP..IEQLSK | |
Retrocopy | VELFLTSDGSTMVSCTASVDIADEHIKPLPQPDPVHDNEETHAQVLKNRLXXXX>QYLKQGPR<IEQLSK |
Parental | MFFTTKHRWYPHGRY--HRCRKNLNPPKDR |
MFF.T...WYP.G.Y..H...KN....KD. | |
Retrocopy | MFFITQY-WYPCGQYQSHSHGKNVDGLKDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 11 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .21 RPM |
SRP007412_heart | 0 .00 RPM | 20 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .13 RPM |
SRP007412_liver | 0 .00 RPM | 11 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3844 |
Gorilla gorilla | retro_ggor_2589 |