RetrogeneDB ID: | retro_rnor_729 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:7100106..7100476(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl42 | ||
Ensembl ID: | ENSRNOG00000042740 | ||
Aliases: | Mrpl42, Mrps32 | ||
Description: | 28S ribosomal protein L42, mitochondrial [Source:RefSeq peptide;Acc:NP_001100252] |
Percent Identity: | 50.81 % |
Parental protein coverage: | 87.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAAAVKWAVSHRTIWRHLFPIQNG-AISSARHKSTYSSLPDDYNCKVELALTSDGRTIVCYHPSVDVPYE |
MA.AVKW..S..T....LF.IQNG.A.SS..HK.TYSSLPDDYN....L.LTS..RTI...H.SVD.... | |
Retrocopy | MASAVKWVISNGTLQKCLFEIQNG>ALSSVCHKFTYSSLPDDYNRNTGLSLTSNSRTIIVCHCSVDILHK |
Parental | HTQPIPHPDLLHNNEETHEQILRTKLEGNRKHLEQGPMIEQLSKVFFTTKHRWY |
H..PIP.P..LH.NE..H.Q.L.TK.E...............S..F.TTKH.WY | |
Retrocopy | HMKPIPYPEPLHSNEGMHKQVLKTKFEXXXXPTP*ARPHDETSGEFLTTKHNWY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .31 RPM |
SRP017611_liver | 0 .00 RPM | 10 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1432 |