RetrogeneDB ID: | retro_rnor_920 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:58118702..58119125(+) | ||
Located in intron of: | ENSRNOG00000025987 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000025964 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl42 | ||
Ensembl ID: | ENSRNOG00000042740 | ||
Aliases: | Mrpl42, Mrps32 | ||
Description: | 28S ribosomal protein L42, mitochondrial [Source:RefSeq peptide;Acc:NP_001100252] |
Percent Identity: | 96.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAVKWAVSHRTIWRHLFPIQNGAISSARHKSTYSSLPDDYNCKVELALTSDGRTIVCYHPSVDVPYEH |
M.AAVKWAVSHRTIWRHLFPIQNGAISSA.HKSTYSSLPDDYNCKVELALTSDGRTIVCYHPSVDVPYEH | |
Retrocopy | MTAAVKWAVSHRTIWRHLFPIQNGAISSACHKSTYSSLPDDYNCKVELALTSDGRTIVCYHPSVDVPYEH |
Parental | TQPIPHPDLLHNNEETHEQILRTKLEGNRKHLEQGPMIEQLSKVFFTTKHRWYPHGQYHRRRKKLNPPKD |
T.PIPHPDLLHNNEETHEQILRTKLEGN.KHLEQGPMIEQLSKVFFTTKHRWYPHGQYHR.RKKLNPPKD | |
Retrocopy | TKPIPHPDLLHNNEETHEQILRTKLEGNHKHLEQGPMIEQLSKVFFTTKHRWYPHGQYHRCRKKLNPPKD |
Parental | R |
R | |
Retrocopy | R |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 14 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .31 RPM |
SRP017611_liver | 0 .00 RPM | 10 .89 RPM |