RetrogeneDB ID: | retro_opri_747 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_2783:66866..67140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSOPRG00000010967 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 60. % |
Parental protein coverage: | 65.25 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LTSDGRTIVCYHPSVDIPYEHT-KPIPRPDPVLNNEETHDQVLKTRLQ-GKSEHLEQGPMVEQLSKMFFT |
LTS.GRTIVCY.P...I.Y....KPIP.PD.VLNNEET.D..L.T.L...K..HLEQ..M.EQLS.MF.. | |
Retrocopy | LTSNGRTIVCYLPPSNI*YGFF*KPIPQPDSVLNNEETLD*ELTTKLE<RKNVHLEQEIMIEQLSQMFL- |
Parental | TKHRWYPHGHYHRRRK-KLDPPKDR |
TK...Y.H..YHR..K.KLD.PKDR | |
Retrocopy | TKYC*YLHEQYHRCSK<KLDHPKDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009832 | 1 retrocopy | |
Bos taurus | ENSBTAG00000002708 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000032825 | 4 retrocopies | |
Homo sapiens | ENSG00000198015 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000022760 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013779 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016805 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005699 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010928 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000010967 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000003791 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004833 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000022791 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000042740 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000030478 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000026544 | 12 retrocopies | |
Tarsius syrichta | ENSTSYG00000006370 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000003312 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007658 | 1 retrocopy |