RetrogeneDB ID: | retro_pabe_2840 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:16778900..16779248(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSPPYG00000004833 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
Percent Identity: | 69.83 % |
Parental protein coverage: | 81.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LYCVCHKSTYSPLPDDYNCSVELAVTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRL |
LY.VC.KS.YS.LPDDYNC..ELAVTS.GRT..CYH..VDIPY.HTKPI..PDP.HNNEE..DQVLKTRL | |
Retrocopy | LYTVCYKSMYSSLPDDYNCKIELAVTSNGRT*ACYHSPVDIPYKHTKPILQPDPGHNNEEIQDQVLKTRL |
Parental | EEKVEHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNPPKDR |
EEK.EHLE..PM..QLSKMFF.....WY.HG.Y.RC.K.L...KDR | |
Retrocopy | EEKGEHLEQRPMLDQLSKMFFSITRCWYSHGQY*RCCKKLDLLKDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 11 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .21 RPM |
SRP007412_heart | 0 .00 RPM | 20 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .13 RPM |
SRP007412_liver | 0 .00 RPM | 11 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3427 |
Pan troglodytes | retro_ptro_2327 |