RetrogeneDB ID: | retro_nleu_1364 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397291.1:7056481..7056907(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL42 | ||
Ensembl ID: | ENSNLEG00000005699 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVCYHPSVDIPYE |
MAVAAVK....K...LKHLFP.QNGALYCV..KS.YS.L.DDYNC...LA.TS.GRT..CYH.SVDIP.E | |
Retrocopy | MAVAAVK*MTVKQIVLKHLFPMQNGALYCVYYKSMYSSLNDDYNCKTALAVTSNGRT*ACYHSSVDIPHE |
Parental | HTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNPPK |
HTKPI..PDPV.NNEE..DQVLKTRLEEK.EHLE..PMIEQLSK.FF.....WY.HG.Y.RC...L...K | |
Retrocopy | HTKPILQPDPVYNNEEI*DQVLKTRLEEKGEHLEQRPMIEQLSKIFFSMTRCWYSHGQY*RCCRKLDLLK |
Parental | DR |
DR | |
Retrocopy | DR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009832 | 1 retrocopy | |
Bos taurus | ENSBTAG00000002708 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000032825 | 4 retrocopies | |
Homo sapiens | ENSG00000198015 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000022760 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013779 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016805 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005699 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010928 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000010967 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000003791 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004833 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000022791 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000042740 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000030478 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000026544 | 12 retrocopies | |
Tarsius syrichta | ENSTSYG00000006370 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000003312 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007658 | 1 retrocopy |