RetrogeneDB ID: | retro_itri_1132 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393383.1:685228..685589(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026544 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.73 % |
Parental protein coverage: | 84.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VQNSALSGVCHKSTFSSLPDDYNCKVELALTSDGRTIVCYHPSVDIPYEHTQPIPQPDPLHNNEETHDQV |
.QN.ALS.VCHKSTFSSL..DYN..V.L.LTSDG..IVC.HPSVDI..EHTQPIPQ.D..HNNE.THDQV | |
Retrocopy | IQNRALSDVCHKSTFSSLSVDYNSRVQLSLTSDGGAIVCSHPSVDIL*EHTQPIPQLDSVHNNEGTHDQV |
Parental | LKTRLEE-KDEHLEEGPMIEKLSKMFFTTKHRWYPHGQYHRRRKNPNPPKD |
LK.RLE..K.E.LE...M.EKL.KMFFTTK.R..PHGQYHRR.KN.NPPKD | |
Retrocopy | LKNRLED>KGEYLEQETMTEKLRKMFFTTKSRLSPHGQYHRRAKNLNPPKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |