Parental gene: | MRPL42, ENSPPYG00000004833 |
| Aliases: | None |
| Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:94570005..94610886(+) |
>ENSPPYG00000004833
ATGGCTGTAGCTGCAGTAAAATGGGTGATGTCAAAGAGAACTATCTTGAAACATTTATTTCCAGTCCAAAATGGAGCTTT
ATATTGTGTTTGTCATAAATCTACGTATTCTCCTCTACCAGATGACTATAATTGCAGCGTAGAGCTTGCTGTGACTTCTG
ATGGCAGGACAATAGTATGCTACCACCCTTCTGTGGACATTCCGTATGAACACACGAAACCTATCCCTCGGCCAGATCCT
GTGCATAATAATGAAGAAACACATGATCAAGTGCTGAAAACCAGATTGGAAGAAAAAGTTGAACACCTTGAGGAAGGACC
TATGATAGAACAACTTAGCAAAATGTTCTTTACTACTAAGCACCGTTGGTATCCTCATGGACGGTATCACAGATGTCGTA
AGAACCTGAATCCTCCAAAAGACAGATGA
ATGGCTGTAGCTGCAGTAAAATGGGTGATGTCAAAGAGAACTATCTTGAAACATTTATTTCCAGTCCAAAATGGAGCTTT
ATATTGTGTTTGTCATAAATCTACGTATTCTCCTCTACCAGATGACTATAATTGCAGCGTAGAGCTTGCTGTGACTTCTG
ATGGCAGGACAATAGTATGCTACCACCCTTCTGTGGACATTCCGTATGAACACACGAAACCTATCCCTCGGCCAGATCCT
GTGCATAATAATGAAGAAACACATGATCAAGTGCTGAAAACCAGATTGGAAGAAAAAGTTGAACACCTTGAGGAAGGACC
TATGATAGAACAACTTAGCAAAATGTTCTTTACTACTAAGCACCGTTGGTATCCTCATGGACGGTATCACAGATGTCGTA
AGAACCTGAATCCTCCAAAAGACAGATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 11 .89 RPM |
| SRP007412_cerebellum | 28 .21 RPM |
| SRP007412_heart | 20 .05 RPM |
| SRP007412_kidney | 30 .13 RPM |
| SRP007412_liver | 11 .78 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009832 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000002708 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000032825 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000198015 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022760 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000013779 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016805 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005699 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010928 | ortholog_one2one | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000010967 | ortholog_one2one | 5 retrogenes | |
| Procavia capensis | ENSPCAG00000003791 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022791 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000042740 | possible_ortholog | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000030478 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000026544 | ortholog_one2many | 12 retrogenes | |
| Tarsius syrichta | ENSTSYG00000006370 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003312 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000007658 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1286 | 70.18 | 79.58 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2368 | 70.48 | 73.94 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2840 | 69.83 | 81.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2914 | 69.90 | 71.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3031 | 63.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_3054 | 57.00 | 67.61 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_3552 | 69.52 | 73.94 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004833 retrocopies