RetrogeneDB ID: | retro_itri_558 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393301.1:14812901..14813233(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026544 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.86 % |
Parental protein coverage: | 78.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AFKWVMS-KRILWKHLFPVQNSALSGVCHKSTFSSLPDDYNCKVELALTSDGRTIVCYHPSVDIPYEHTQ |
A.KWV.S.KR...K.LFPV.N.ALS.VCHK.T.SSLPDDY.CKVELAL...GR.I.CYHPSVDIP..H.. | |
Retrocopy | ALKWVIS<KRTILKPLFPVRNRALSCVCHKCTYSSLPDDYICKVELALITHGRMITCYHPSVDIPCGHAK |
Parental | PIPQPDPLHNNEETHDQVLKTRLEEKDEHLEEGPMIEKLSKM |
PI.QPDP.HNNEETHDQVLKTR.E.KD.H.E.GP......K. | |
Retrocopy | PITQPDPVHNNEETHDQVLKTRIE*KDKHPEQGPTTKT*QKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |