RetrogeneDB ID: | retro_mputfur_1138 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897023.1:28779..29192(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSMPUG00000015075 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 69.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVM-ATVKKGK |
MS..G.GG.S.AKF.ISLGLPV..VINC.DNTGAKNL.II.VKGIKG.L.R...AGVG.MV..ATVKKGK | |
Retrocopy | MSEQGYGGFSIAKFWISLGLPVRPVINCVDNTGAKNLFIILVKGIKG*LSRITGAGVGTMVR<ATVKKGK |
Parental | PELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI |
PE.RKK..PAVVI.Q.K.......V...FEDN.GV.VNNKG.MKG.AI..PVAKECADLWP.IASNA..I | |
Retrocopy | PEPRKKAPPAVVIPQ*KNTVES*CVY--FEDNMGVMVNNKGKMKGPAIAEPVAKECADLWPKIASNARRI |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004268 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000008311 | 9 retrocopies | |
Gorilla gorilla | ENSGGOG00000025082 | 9 retrocopies | |
Latimeria chalumnae | ENSLACG00000004430 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004502 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000012634 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015075 | 2 retrocopies |
retro_mputfur_1138 , retro_mputfur_1324,
|
Nomascus leucogenys | ENSNLEG00000000642 | 7 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013915 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012445 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000001957 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000004107 | 10 retrocopies |