RetrogeneDB ID: | retro_mmul_2391 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:34056294..34056706(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSMMUG00000004502 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:RefSeq peptide;Acc:NP_001253138] |
Percent Identity: | 59.86 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISV-KGIKGRLNRLPAAGVGDMVMATVKKGKP |
SKR..G.SS.AKF.I.LGL..GAVI.CAD.TG.K.L.II....G....L.RLP.A.V.D.VM.T.KKGK. | |
Retrocopy | SKRRHGDSSSAKFWIALGLLIGAVITCADHTGVKSL*IIAM>RGLQ--LDRLPVASVSDVVMVTAKKGKA |
Parental | ELRKKVHPAVVIRQRKSYRRKDGV-FLYFEDNAGVIVN-NKGEMKGSAITGPVAKECADLWPRIASNAGS |
E.RKKV..A.VI.Q.KS.RRK........EDNAG.....NKG..KGSA.TGPVAK.CADLWP...SNAGS | |
Retrocopy | EIRKKVCAALVI*QQKSHRRKHNI<LKKLEDNAGS*LK>NKGKGKGSAMTGPVAKKCADLWPGLVSNAGS |
Parental | IA |
.A | |
Retrocopy | VA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 102 .64 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 104 .87 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .75 RPM |
SRP007412_heart | 0 .00 RPM | 217 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 219 .83 RPM |
SRP007412_liver | 0 .00 RPM | 157 .74 RPM |
SRP007412_testis | 0 .00 RPM | 73 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_556 |
Pan troglodytes | retro_ptro_417 |
Gorilla gorilla | retro_ggor_504 |
Pongo abelii | retro_pabe_512 |