RetrogeneDB ID: | retro_ocun_251 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:47023149..47023572(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021038 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSOCUG00000013915 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 97.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSKRGRGGSSGAKF.ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK. | |
Retrocopy | MSKRGRGGSSGAKFQISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKL |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA.VIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA | |
Retrocopy | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAEVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .50 RPM | 83 .89 RPM |
SRP017611_kidney | 0 .20 RPM | 165 .82 RPM |
SRP017611_liver | 0 .08 RPM | 49 .33 RPM |