RetrogeneDB ID: | retro_ocun_482 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:67611372..67611692(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSOCUG00000013915 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 65.49 % |
Parental protein coverage: | 77.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MSKRGRGGSSGAKFRISLGLP-VGAVINCADNTGAKNLYIISV-KGIK-GRLNRLPAAGVGDMVMATVKK |
MSK.G.GGSSG.KFRISLGL..VGAVI.C......K..Y.....KG.K.G.L.RLP.AG.G.MVM.TVK. | |
Retrocopy | MSK*GCGGSSGMKFRISLGLL<VGAVIKCLPHRSQKSVYHLYK<KGTK<GWLKRLPTAGMGNMVMVTVKE |
Parental | GKPELRKKVH-PAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK |
GKP.LR.KVH..AVV..Q.KSY...D.VFLYFEDNAGVIVNNK | |
Retrocopy | GKPQLRNKVH<SAVVT*QPKSY-HEDSVFLYFEDNAGVIVNNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 165 .82 RPM |
SRP017611_liver | 0 .00 RPM | 49 .33 RPM |