RetrogeneDB ID: | retro_rnor_2981 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:129362760..129363149(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSRNOG00000004107 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832] |
Percent Identity: | 66.42 % |
Parental protein coverage: | 97.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE-LR |
GRGG.SG.K..ISL.L.VGAVIN.ADN.GAKNLYIISV.GIK..L.RLP.AGVG.MV....KK.KPE..R | |
Retrocopy | GRGGPSGMKSQISLCLQVGAVINYADNSGAKNLYIISVRGIKEWLKRLPVAGVGGMVL--FKKDKPE<VR |
Parental | KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
...HPAVVI..R.....KDG.FLYFE..AG..VNN.GEM..SA.TG.VAKEC.DLWPR.A.NA.S.A | |
Retrocopy | GNYHPAVVI*HRR----KDGRFLYFEHDAGATVNNNGEMESSAVTGLVAKECTDLWPRPAPNAESVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .17 RPM |
SRP017611_liver | 0 .00 RPM | 84 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_3603 |