RetrogeneDB ID: | retro_rnor_498 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:171261370..171261658(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSRNOG00000004107 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 68.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSK.GRGG.SGAKFRISLGLPVGAVINCADNTGAK.LY.ISVKGIKGR.N.LPAAGVGDMVMATVKKGKP | |
Retrocopy | MSKLGRGGPSGAKFRISLGLPVGAVINCADNTGAKTLYVISVKGIKGRPN*LPAAGVGDMVMATVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFL |
ELRKKVHP.VVI.QR.SY.RK.GVF. | |
Retrocopy | ELRKKVHPTVVIQQRESYGRKGGVFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .17 RPM |
SRP017611_liver | 0 .00 RPM | 84 .99 RPM |