RetrogeneDB ID:

retro_ggor_256

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:1:80950419..80950842(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL23
Ensembl ID:ENSGGOG00000025082
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_256
ATGTCTAAGCAAGGATGTGGTGGGTTCTCCAGTGTGAAATACTGGAATTCCTTGGGTTTTCCGATAGGAGCCAAGATCAA
TTGTGTTGACAACACAGGAGCCAAAAATCTCTATATCATGTCTGTGAAGGGAAACAAAGGGCAGCTGAACAGACTTTCCA
CTGCTGGAGTGGGTGACATGGTGATGGTCAGTCAATAAAGGCAAACAACCAGAGCTCAGAAAGGAAGTATATCCAGCAGT
GGTAGTTCAACAAAAAAAAGTCATACCAAAGAAAGAATGGCATGTTTCTTTATTTTGCAGATAATATAGGGGTCATAGAA
AACAATGAAGGCAAGATGGAAAGGTCCTGCCATCATAAGACCAGTTGGAAAGGAGTGTGCAGACTTGTGGCCCAGGATTG
TGTTAGATGCTGACAGCATTGCG

ORF - retro_ggor_256 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.73 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV-KKGK
MSK.G.GG.S..K...SLG.P.GA.INC.DNTGAKNLYI.SVKG.KG.LNRL..AGVGDMVM....K...
RetrocopyMSKQGCGGFSSVKYWNSLGFPIGAKINCVDNTGAKNLYIMSVKGNKGQLNRLSTAGVGDMVMVSQ>KGKQ
ParentalPELRKKVHPAVVIR-QRKSYRRKDGVFLYFEDNAGVIVNNKGEM-KGSAITGPVAKECADLWPRIASNAG
PELRK.V.PAVV......SY.RK.G.FLYF.DN.GVI.NN.G.M.KG.AI..PV.KECADLWPRI...A.
RetrocopyPELRKEVYPAVVVQ>XXXSYQRKNGMFLYFADNIGVIENNEGKM>KGPAIIRPVGKECADLWPRIVLDAD
ParentalSIA
SIA
RetrocopySIA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 88 .67 RPM
SRP007412_cerebellum 0 .00 RPM 83 .41 RPM
SRP007412_heart 0 .00 RPM 74 .11 RPM
SRP007412_kidney 0 .00 RPM 374 .17 RPM
SRP007412_liver 0 .00 RPM 246 .11 RPM
SRP007412_testis 0 .00 RPM 176 .43 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_256 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_256 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 13 parental genes, and 81 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000042686 retrocopies
Callithrix jacchus ENSCJAG000000083119 retrocopies
Gorilla gorilla ENSGGOG00000025082 9 retrocopies
Latimeria chalumnae ENSLACG000000044301 retrocopy
Macaca mulatta ENSMMUG000000045029 retrocopies
Monodelphis domestica ENSMODG000000126343 retrocopies
Mustela putorius furoENSMPUG000000150752 retrocopies
Nomascus leucogenys ENSNLEG000000006427 retrocopies
Oryctolagus cuniculus ENSOCUG000000139156 retrocopies
Otolemur garnettii ENSOGAG000000124457 retrocopies
Ochotona princeps ENSOPRG0000000195710 retrocopies
Pteropus vampyrus ENSPVAG000000022772 retrocopies
Rattus norvegicus ENSRNOG0000000410710 retrocopies



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