RetrogeneDB ID: | retro_ggor_256 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:80950419..80950842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSGGOG00000025082 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV-KKGK |
MSK.G.GG.S..K...SLG.P.GA.INC.DNTGAKNLYI.SVKG.KG.LNRL..AGVGDMVM....K... | |
Retrocopy | MSKQGCGGFSSVKYWNSLGFPIGAKINCVDNTGAKNLYIMSVKGNKGQLNRLSTAGVGDMVMVSQ>KGKQ |
Parental | PELRKKVHPAVVIR-QRKSYRRKDGVFLYFEDNAGVIVNNKGEM-KGSAITGPVAKECADLWPRIASNAG |
PELRK.V.PAVV......SY.RK.G.FLYF.DN.GVI.NN.G.M.KG.AI..PV.KECADLWPRI...A. | |
Retrocopy | PELRKEVYPAVVVQ>XXXSYQRKNGMFLYFADNIGVIENNEGKM>KGPAIIRPVGKECADLWPRIVLDAD |
Parental | SIA |
SIA | |
Retrocopy | SIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 88 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 83 .41 RPM |
SRP007412_heart | 0 .00 RPM | 74 .11 RPM |
SRP007412_kidney | 0 .00 RPM | 374 .17 RPM |
SRP007412_liver | 0 .00 RPM | 246 .11 RPM |
SRP007412_testis | 0 .00 RPM | 176 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004268 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000008311 | 9 retrocopies | |
Gorilla gorilla | ENSGGOG00000025082 | 9 retrocopies |
retro_ggor_1574, retro_ggor_1744, retro_ggor_1746, retro_ggor_2416, retro_ggor_2508, retro_ggor_256 , retro_ggor_2710, retro_ggor_2757, retro_ggor_504,
|
Latimeria chalumnae | ENSLACG00000004430 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004502 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000012634 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015075 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000642 | 7 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013915 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012445 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000001957 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002277 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004107 | 10 retrocopies |