RetrogeneDB ID: | retro_cjac_2639 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 5:96179132..96179551(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000012488 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSCJAG00000008311 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 83.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSK...GGSSGAKF.ISLGLPVGAVINCADNTGAKNLYIIS.KGIKG.LNR.PAA..G.MVM.TVKKGKP | |
Retrocopy | MSKQRQGGSSGAKFQISLGLPVGAVINCADNTGAKNLYIISMKGIKGWLNRPPAASMGGMVMVTVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMK-GSAITGPVAKECADLWPRIASNAGSI |
ELRKKVHPAVV..QR.S.RRKDGVFLYFEDNAGV..NNK.EMK..SAITGPVAKE.ADLWP.IA.NAGSI | |
Retrocopy | ELRKKVHPAVVTQQRTSCRRKDGVFLYFEDNAGVKMNNKSEMK<SSAITGPVAKEGADLWPQIAPNAGSI |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 110 .29 RPM |
SRP051959_heart | 0 .00 RPM | 107 .63 RPM |
SRP051959_kidney | 0 .00 RPM | 117 .81 RPM |
SRP051959_liver | 0 .02 RPM | 154 .01 RPM |
SRP051959_lung | 0 .02 RPM | 141 .15 RPM |
SRP051959_lymph_node | 0 .02 RPM | 268 .98 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 116 .03 RPM |
SRP051959_spleen | 0 .00 RPM | 205 .57 RPM |