Parental gene: | RPL23, ENSCJAG00000008311 |
| Aliases: | None |
| Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:110727037..110733017(-) |
>ENSCJAG00000008311
ATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTAGGAGCTGTGATCAA
CTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCTGTGAAGGGGATCAAGGGACGGCTGAACAGACTTCCCG
CTGCTGGTGTCGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAAGGTACATCCAGCAGTG
GTCATTCGACAACGAAAGTCATACCGGAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGGGTCATAGTGAA
CAATAAAGGCGAGATGAAAGGTTCTGCCATTACAGGACCAGTAGCAAAGGAGTGTGCAGACCTGTGGCCCCGGATTGCAT
CCAATGCTGGCAGCATTGCATGA
ATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTAGGAGCTGTGATCAA
CTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCTGTGAAGGGGATCAAGGGACGGCTGAACAGACTTCCCG
CTGCTGGTGTCGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAAGGTACATCCAGCAGTG
GTCATTCGACAACGAAAGTCATACCGGAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGGGTCATAGTGAA
CAATAAAGGCGAGATGAAAGGTTCTGCCATTACAGGACCAGTAGCAAAGGAGTGTGCAGACCTGTGGCCCCGGATTGCAT
CCAATGCTGGCAGCATTGCATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 205 .57 RPM |
| SRP051959_skeletal_muscle | 116 .03 RPM |
| SRP051959_lymph_node | 268 .98 RPM |
| SRP051959_lung | 141 .15 RPM |
| SRP051959_liver | 154 .01 RPM |
| SRP051959_kidney | 117 .81 RPM |
| SRP051959_heart | 107 .63 RPM |
| SRP051959_colon | 110 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004268 | possible_ortholog | 6 retrogenes | |
| Bos taurus | ENSBTAG00000003229 | possible_ortholog | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000028955 | possible_ortholog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000009153 | possible_ortholog | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000010002 | possible_ortholog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000001372 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000014502 | ortholog_one2one | 10 retrogenes | |
| Homo sapiens | ENSG00000125691 | ortholog_one2one | 9 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025082 | possible_ortholog | 9 retrogenes | |
| Latimeria chalumnae | ENSLACG00000004430 | ortholog_many2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000028450 | possible_ortholog | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000001188 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000015673 | possible_ortholog | 9 retrogenes | |
| Macaca mulatta | ENSMMUG00000004502 | possible_ortholog | 9 retrogenes | |
| Monodelphis domestica | ENSMODG00000012634 | possible_ortholog | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015075 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000071415 | possible_ortholog | 10 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000642 | possible_ortholog | 7 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000001230 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013915 | ortholog_one2one | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000012445 | possible_ortholog | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000001957 | possible_ortholog | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000008501 | possible_ortholog | 10 retrogenes | |
| Pan troglodytes | ENSPTRG00000009079 | possible_ortholog | 9 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002277 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000004107 | possible_ortholog | 10 retrogenes | |
| Sus scrofa | ENSSSCG00000021590 | possible_ortholog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000014279 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000005694 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1129 | 67.42 | 92.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1483 | 64.37 | 61.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2283 | 71.26 | 62.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2598 | 84.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2639 | 83.69 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2772 | 71.13 | 98.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2885 | 87.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_3128 | 73.63 | 61.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_3831 | 83.67 | 69.29 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008311 retrocopies