RetrogeneDB ID: | retro_mmul_2366 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:107467075..107467390(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSMMUG00000004502 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:RefSeq peptide;Acc:NP_001253138] |
Percent Identity: | 53.21 % |
Parental protein coverage: | 75.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSKRGRGGSSGA-KFR-ISLGLP-VGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKK |
M.K.G.GGS....KFR.I.LGLP..GAVI..AD.T.A.N.Y.I..K.IK..LNRL....VG.MVMATVKK | |
Retrocopy | MLKPGHGGSCDV<KFR<IALGLP<LGAVIHYADGTEAENPYVIVMKEIKVQLNRLSNIAVGAMVMATVKK |
Parental | GKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIV |
GK.ELR.KV...V.................FEDN.GVIV | |
Retrocopy | GKSELRRKVYAEVQEQKWSFDNETNNXXXXFEDNTGVIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 102 .64 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 104 .87 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .75 RPM |
SRP007412_heart | 0 .00 RPM | 217 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 219 .83 RPM |
SRP007412_liver | 0 .00 RPM | 157 .74 RPM |
SRP007412_testis | 0 .00 RPM | 73 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4106 |
Gorilla gorilla | retro_ggor_2757 |
Pongo abelii | retro_pabe_3362 |
Callithrix jacchus | retro_cjac_1483 |