RetrogeneDB ID: | retro_rnor_1195 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:51792624..51793052(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSRNOG00000004107 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832] |
Percent Identity: | 79.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSK.G.GGSSGAK..ISL.LPVGA.INCADNTGAK.LYII.VKGIKG.LNRLPAAGV.D..MATVKKGKP | |
Retrocopy | MSK*GCGGSSGAKVWISLVLPVGAGINCADNTGAKTLYIIFVKGIKG*LNRLPAAGVNDVAMATVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGV---FLYFEDNAGVIVNNKGEMKGSAITGPVAKECAD-LWPRIASNA |
ELRK.VH.A.VIRQ.KS.R.KDGV......F..NAGVIVNNKGEMKGSAITGPVAK.CAD.LWPRI.SNA | |
Retrocopy | ELRKNVHLAAVIRQ*KSDRTKDGVXXXXXXFDNNAGVIVNNKGEMKGSAITGPVAKVCAD<LWPRIVSNA |
Parental | GSIA |
GS.A | |
Retrocopy | GSTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .17 RPM |
SRP017611_liver | 0 .07 RPM | 84 .99 RPM |