RetrogeneDB ID: | retro_ocun_1027 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:5279040..5279455(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSOCUG00000013915 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 73.05 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MSKRGRGGSSG-AKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
MSK.G..GSS...KFRISL.LPVGAVI.CADN.G.KNL.II.VKG.K..LNRL.A.G..D.VMATVKKG. | |
Retrocopy | MSK*GCCGSSV<VKFRISLDLPVGAVISCADNRGDKNLTIICVKGLKVQLNRLSATGLDDLVMATVKKGE |
Parental | PELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVI-VNNKGEMKGSAITGPVAKECADLWPRIASNAGS |
P.LRKKVH.AVVIR..KSY.RKD.VFLYF..NAG.I..NNKGEMKGSA.TGPV.K.CAD.WPRI.SN.GS | |
Retrocopy | PDLRKKVHSAVVIR**KSYHRKDSVFLYF*KNAGII<INNKGEMKGSAFTGPVVKQCADSWPRIVSNTGS |
Parental | I |
I | |
Retrocopy | I |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 83 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 165 .82 RPM |
SRP017611_liver | 0 .00 RPM | 49 .33 RPM |