RetrogeneDB ID: | retro_rnor_1539 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:145935643..145936057(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSRNOG00000004107 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832] |
Percent Identity: | 68.53 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSKRGRGGSSGAKFR-ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
M.K.G...SSGAKFR.IS..L.VGAVINC.DN.......IIS.KGIK..L.RL..AGVGDMVMA.VKK.K | |
Retrocopy | MLK*GCVMSSGAKFR<ISMSLLVGAVINCPDNEEPR-I*IISMKGIKRQLKRLRVAGVGDMVMAKVKKQK |
Parental | PELR-KKV-HPAVVIRQRKSYRRKDGVFLY-FEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNA |
.ELR.KK..H.AV.IRQ.KS..RKDGVFLY.FEDNAGV.VNN...M.GS..TGPVAKE.ADL..RIASNA | |
Retrocopy | SELR<KKMDHLAVAIRQ*KSFGRKDGVFLY<FEDNAGVMVNNEVQMNGSVVTGPVAKEHADLRARIASNA |
Parental | GSI |
GSI | |
Retrocopy | GSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .17 RPM |
SRP017611_liver | 0 .00 RPM | 84 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2153 |