RetrogeneDB ID: | retro_rnor_2445 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:28430923..28431162(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSRNOG00000004107 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832] |
Percent Identity: | 54.88 % |
Parental protein coverage: | 56.43 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VGDMVMATV-KKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKG-SAIT-GPVAK |
VGD..MAT...KG......KV.PA.VI.Q.K.Y..K..V.L.FE.NAG..V.NKGE..G..AI..GPVAK | |
Retrocopy | VGDTEMATA>RKGS-QS*AKVLPALVI*QWKLYQ*KYKVSLCFEENAGIAVSNKGEVQGSAAID>GPVAK |
Parental | ECADLWPRIASN |
EC..L.PR.A.N | |
Retrocopy | ECVHLCPRTAAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .17 RPM |
SRP017611_liver | 0 .00 RPM | 84 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_583 |