RetrogeneDB ID: | retro_rnor_347 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:2386551..2386974(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000024412 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSRNOG00000004107 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832] |
Percent Identity: | 80.43 % |
Parental protein coverage: | 98.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL |
K..RGGSSGAKFRISLGL.VGAVIN.AD.TG.KN.YIISVK.IKGRL.RLPAAGVG.MVMATV.K..P.L | |
Retrocopy | KQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQL |
Parental | RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
RKKVHPA.VIRQ.KS..RKDGV.LYFE..A.VIVNNKG.MKGSAITGP.AKE.AD.WPRIASNAGS.A | |
Retrocopy | RKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .28 RPM | 123 .17 RPM |
SRP017611_liver | 0 .07 RPM | 84 .99 RPM |