RetrogeneDB ID: | retro_ocun_1270 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 5:28280530..28280801(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSOCUG00000013915 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 71.88 % |
Parental protein coverage: | 67.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSKRGRGGSSGAKFRISLGL-PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
M.KRG...SSGAKFRISL.L..VGAVI.CADNTG.KNLYIISVK.IKG..NRLPAAGVGD.VMAT....K | |
Retrocopy | MLKRGCSRSSGAKFRISLSL<SVGAVITCADNTGTKNLYIISVKAIKGWPNRLPAAGVGDVVMAT---DK |
Parental | PELRK-KVHPAVVIRQRKSYRRKDGV |
PELR..K.HPA.VI.Q.KS..R..GV | |
Retrocopy | PELRR<KGHPAAVIQQGKSSWRREGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 165 .82 RPM |
SRP017611_liver | 0 .00 RPM | 49 .33 RPM |