RetrogeneDB ID: | retro_sara_67 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_1875:145489..145833(-) | ||
Located in intron of: | ENSSARG00000009582 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSSARG00000000984 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 64.75 % |
Parental protein coverage: | 94.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL |
QIFV.TL.GKTI...VEPSDT.ENVKAKIQDKEGI..D.Q.LIFA..Q.EDG.TLS..N.Q...TL.LVL | |
Retrocopy | QIFVWTLAGKTI--KVEPSDTMENVKAKIQDKEGILHDLQHLIFACRQPEDGHTLSEFNMQ---TLYLVL |
Parental | RLR-GGIIEPSLRQLAQKYNCEKMICRKCYARLHPRAVNCRKKKCGHTNNLR |
.L...G..E.SL..LA.K...EK.IC.KCYARLHP.AV.C...KCGH.NN.R | |
Retrocopy | YLH<QGHQESSLYPLA-KSTIEKRICQKCYARLHPHAVKCHEMKCGHNNNPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |