RetrogeneDB ID: | retro_btau_1240 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:106294418..106294684(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046261 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSBTAG00000003846 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L37a [Source:UniProtKB/Swiss-Prot;Acc:Q3MIC0] |
Percent Identity: | 77.42 % |
Parental protein coverage: | 97.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVG-IWHCGSCMKT-VAGGA |
MAK.TKKVGI.GKY.TRYGASLRK.VKK.EISQHAK.TCSFCGKTK.K....G.IW.CGSCMKT..AGGA | |
Retrocopy | MAKCTKKVGIMGKYTTRYGASLRKTVKKTEISQHAKNTCSFCGKTK-KEMSCG>IWYCGSCMKT<IAGGA |
Parental | WTY-NTTSAVTVKSAIRRLKELK |
WT...TTS.VT.KSAIRRLKEL. | |
Retrocopy | WTF<HTTSPVTEKSAIRRLKELR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 245 .27 RPM |
ERP005899_muscle | 0 .00 RPM | 776 .84 RPM |
SRP017611_brain | 0 .09 RPM | 70 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 207 .75 RPM |
SRP017611_liver | 0 .00 RPM | 128 .97 RPM |
SRP030211_testis | 0 .02 RPM | 95 .87 RPM |