RetrogeneDB ID: | retro_fcat_1364 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:113944508..113944774(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 70.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKRTKKVGIVGKYGTRYGASLRK-MVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAW |
MAK.TKK...V..YG.RYGASLRK.MVKK.E.SQ.AK..C.FCGKTKMKR.AVG.WHC..CMKT...G.W | |
Retrocopy | MAKHTKK---VSNYGIRYGASLRK<MVKKTEVSQQAKHACPFCGKTKMKRQAVGTWHCSLCMKTIGSGPW |
Parental | TYNTTSAVTVKSAIRRLKELKDQ |
TY.TTSAVTVKSAIR.LK...DQ | |
Retrocopy | TYKTTSAVTVKSAIRQLKKVEDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |