RetrogeneDB ID: | retro_fcat_149 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:25697322..25697586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028134 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 95.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTT |
TKKV.I..KY.TRYG.S.RKMVKKIEISQHAKYTCSFCGKTKMKRRA.GIW.CGSCMKTVAGG.WTYNTT | |
Retrocopy | TKKVRIANKYWTRYGTSFRKMVKKIEISQHAKYTCSFCGKTKMKRRALGIWRCGSCMKTVAGGTWTYNTT |
Parental | SAVTVKSAIRRLKELKDQ |
S.VTVK.AIRRLKELKDQ | |
Retrocopy | STVTVKPAIRRLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 61 .17 RPM |
SRP017611_kidney | 1 .03 RPM | 219 .82 RPM |
SRP017611_liver | 0 .51 RPM | 103 .31 RPM |