RetrogeneDB ID: | retro_fcat_612 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:45776390..45776665(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 72.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAKRTKKVGIVGKYGT-RYGASLRKMVKKIEISQHAKYTCSFCGKTKMK-RRAVGIWHCGSCMKTVAGGA |
MAK.TKK....G..G...YGASL.KMVKKIEISQHAK.TCSFCG.T.MK.RRA.GI.HCGSCM....GGA | |
Retrocopy | MAKHTKKSELSGNTGP>LYGASLGKMVKKIEISQHAKCTCSFCGQTTMK<RRAAGILHCGSCMTNAVGGA |
Parental | WTYNTT-SAVTVKSAIRRLKELKDQ |
WTYNT..S.VTVK.AIRRLKELK.Q | |
Retrocopy | WTYNTA<SKVTVKLAIRRLKELKHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |