RetrogeneDB ID: | retro_fcat_1662 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:14958011..14958192(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 59.09 % |
Parental protein coverage: | 65.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SQHA-KYTCSFCGK-TKMKRRAVGIWHCG----SCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKD |
SQH..KYT.S.CGK.TKMK......W..G.....C....AGGAW.YNTTSAVT.KS..RRLKELK. | |
Retrocopy | SQHT<KYTSSLCGK<TKMKNE---LWGSGIVVPACKP*RAGGAWNYNTTSAVTAKSVMRRLKELKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .21 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |