RetrogeneDB ID: | retro_vpac_240 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3180:1273515..1273784(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSVPAG00000002529 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 67.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKRTKKVGIVGKYGT-RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAW |
MAK.TKKV...GKY.T..YGASLRKM.KK.EISQ..KYTCSFCGK.K.K..A....HCGSCM......AW | |
Retrocopy | MAKCTKKVRKMGKYWT<HYGASLRKMAKKTEISQTTKYTCSFCGKAK-KG*AMRTRHCGSCMNS-SWCAW |
Parental | TYNTTSAVTVKSAIRRLKELKDQ |
T.NTTS..TVKSAIR.LKELK.Q | |
Retrocopy | TCNTTSTLTVKSAIRGLKELKVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |