RetrogeneDB ID: | retro_fcat_1940 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:98610651..98610925(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 59.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAKRTKKVGIVGKYGTRYGASL-RKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAW |
..KRTKKV.I..K..T.Y.A.L.RKM.K...I..HA..TCSF.G.TKM...A..IWHCGSCM...AGG.. | |
Retrocopy | LGKRTKKVRILCKGRTCYIAAL<RKMWKRSKIIEHAM*TCSFYGRTKMESQAMVIWHCGSCMNIIAGGV* |
Parental | TYNTTSAVTVKSAIRRLK-ELKDQ |
TY...SAVT..SAIRRL..ELKDQ | |
Retrocopy | TYTPVSAVTINSAIRRLR<ELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |