RetrogeneDB ID: | retro_mmus_322 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:58428454..58428662(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37a | ||
Ensembl ID: | ENSMUSG00000046330 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:MGI Symbol;Acc:MGI:98068] |
Percent Identity: | 57.75 % |
Parental protein coverage: | 76.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ASLRKMVKKIEISQHAKYTCSFCG-KTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE |
.S.RKMV..IE..QHAKY.C.FCG.K.K.K..AVGIWHCGS.....A.G.W.Y.TT.AV......RRL.E | |
Retrocopy | SSFRKMVENIEVKQHAKYACTFCG>KAKIKK*AVGIWHCGSHREMQADGTWIY-TTTAVAA*PVTRRLEE |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .26 RPM | 32 .45 RPM |
SRP007412_cerebellum | 0 .13 RPM | 19 .41 RPM |
SRP007412_heart | 0 .06 RPM | 39 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .62 RPM |
SRP007412_liver | 0 .00 RPM | 35 .64 RPM |
SRP007412_testis | 0 .00 RPM | 37 .83 RPM |