RetrogeneDB ID: | retro_mmus_699 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:29354198..29354456(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082721 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37a | ||
Ensembl ID: | ENSMUSG00000046330 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:MGI Symbol;Acc:MGI:98068] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 95.65 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTT |
TK......KY.T.Y.ASL.KMVK.IE.SQ...YTCSFCGKTK.KR.AV.IWHC.S.MK.V.G...TY..T | |
Retrocopy | TKRGRLLRKYETAYSASL*KMVKRIEMSQQVTYTCSFCGKTKIKR*AVSIWHCDSYMKIVTGKS*TY--T |
Parental | SAVTVKSAIRRLKELKDQ |
.A.TVKS..RRLK.LKDQ | |
Retrocopy | EAATVKSSTRRLKNLKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 32 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .41 RPM |
SRP007412_heart | 0 .00 RPM | 39 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .62 RPM |
SRP007412_liver | 0 .00 RPM | 35 .64 RPM |
SRP007412_testis | 0 .00 RPM | 37 .83 RPM |