RetrogeneDB ID: | retro_fcat_1704 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:18529844..18530117(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 79.12 % |
Parental protein coverage: | 98.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTY |
AK...KVGI.GKYGT.YGASLRKMVKKIE.SQH.K.TCSF..K..MK..AVG.WHCGSCMKTVA..AWT. | |
Retrocopy | AKYP*KVGIIGKYGTHYGASLRKMVKKIEGSQHTKNTCSFWDKREMKT*AVGMWHCGSCMKTVASCAWTH |
Parental | NTTSAVTVKSAIRRLKELKDQ |
.TTSAVTVKSAIRRLKELKDQ | |
Retrocopy | STTSAVTVKSAIRRLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .52 RPM | 219 .82 RPM |
SRP017611_liver | 0 .10 RPM | 103 .31 RPM |