RetrogeneDB ID: | retro_fcat_633 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:83799790..83800066(-) | ||
Located in intron of: | ENSFCAG00000022741 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 78.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT |
MAK.TKKVGI..K.GT.YGASLRKMVKKIEISQ.AKYTCSF.G.TKMKR.AVGIWHC.SCMKT.AG...T | |
Retrocopy | MAKCTKKVGIISKHGTHYGASLRKMVKKIEISQQAKYTCSFLG*TKMKRQAVGIWHCDSCMKTAAGSTQT |
Parental | YNTTSAVTVKSAIRRLKELKDQ |
Y.TTSA.TV.SAIRRLK.L..Q | |
Retrocopy | YITTSAITVTSAIRRLKDLRGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |