RetrogeneDB ID: | retro_cpor_625 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:6449479..6450218(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1191 | ||
Ensembl ID: | ENSCPOG00000019402 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.41 % |
Parental protein coverage: | 82.3 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MASRQPEVPALGPSGPLGKMSLPIGMCRRAFSYDDALQDPAPMTPPPADM-GSIPWKPVIPVRKYQHLAK |
.AS..PEVP.LGPSGPLGK.SLP..MC..AF..DDALQD...MTPP..DM.GS...KPVI...KY..LAK | |
Retrocopy | VAST*PEVPTLGPSGPLGKLSLPPEMCHWAFNCDDALQDLVLMTPPLVDM<GSF**KPVILEHKYHFLAK |
Parental | AEEEETSVSPTAMTLATATDSTDKVPVVKAKAT-HVLMSSLITKQTQESIHRFEQQAGLRDAGYTPHKGL |
.EEE..SVS...MTL..ATDS.DKV.VVKAKAT.HV.MSSLITKQT.ESIH.FEQQAGLRDAG.TP.K.. | |
Retrocopy | VEEEKASVS---MTLVMATDSIDKVLVVKAKAT<HVIMSSLITKQTKESIHHFEQQAGLRDAGHTPQK-I |
Parental | TTEESKYLRVAEALHKLKLQSGEMTKE-EKQPASGQSSPSSTPHSSPKQKSRGWFTSGSSTALTGPPPSA |
TT.E.KYLRV..AL.KLKLQS....KE.EKQPA..QS.P.S.PHSS..Q.SRG.FTSGSSTALTGP.PS. | |
Retrocopy | TTKETKYLRVVDALYKLKLQSEKIIKE>EKQPALDQSYPRSIPHSSLTQESRG*FTSGSSTALTGPNPST |
Parental | MDPGSGDKDKTSLDKWNVFAPRHLQKSDSG-GFAVQAYKGAQKPS |
MDP...DKD..SLDKWN.F..R.LQKS....GFAVQAYKG.QKPS | |
Retrocopy | MDPAGEDKDRISLDKWNMFGLRALQKSHFE<GFAVQAYKGVQKPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 47 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 55 .38 RPM |
SRP017611_liver | 0 .00 RPM | 29 .08 RPM |
SRP040447_lung | 0 .00 RPM | 30 .85 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 27 .22 RPM |