RetrogeneDB ID: | retro_pabe_2615 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4_random:18515088..18516002(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | P33MONOX | ||
Ensembl ID: | ENSPPYG00000016068 | ||
Aliases: | None | ||
Description: | putative monooxygenase p33MONOX [Source:RefSeq peptide;Acc:NP_001126288] |
Percent Identity: | 90.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASRQPEVPALEASGPLGKMSLPIGIYRRALSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKV |
MASRQPEVPALEASGPLGKMSLP.GIYRRALSYDDTL.DPA.MTPPPSDMGS.PWKPVIPE.KYQHL.KV | |
Retrocopy | MASRQPEVPALEASGPLGKMSLPFGIYRRALSYDDTLKDPASMTPPPSDMGSIPWKPVIPESKYQHLTKV |
Parental | EEGEASLPSPA-MTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLT |
EEGEASLPSPA...LSSAIDSVDKVPVVKAKATHVIMN.LITKQTQES.QHF.RQAGLRDAGYTPHKG.T | |
Retrocopy | EEGEASLPSPA<QSLSSAIDSVDKVPVVKAKATHVIMNYLITKQTQESFQHFGRQAGLRDAGYTPHKGVT |
Parental | TEETKYLRVAEALHKLKLQSGEITKEERQPASAQSTPSTTPHSSPKQRSRGWFTSGSSTALPGPNPSTMD |
T..TKYLRVAEALHKLKLQSGEI.KEER.PASA.STPSTT.H.S.KQR.RGWFTSGSSTALPGPNPSTMD | |
Retrocopy | TQKTKYLRVAEALHKLKLQSGEIAKEERPPASALSTPSTTSHFSLKQRPRGWFTSGSSTALPGPNPSTMD |
Parental | SGSGDKDRNLSDKWSLFGPRSLQKYDSGSSATQAYRGVQKPSPLELIRAQANRMAEDPAALKPPKMDIPV |
SGSGDKDRNLSDKWSLFGPRSLQKYDSGS.ATQAYRG.QKPSP.ELIRAQANRM.EDPAALKPPKM..PV | |
Retrocopy | SGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPMELIRAQANRMSEDPAALKPPKMEFPV |
Parental | MEGKKQPPRAHNLKPRDLNVLTPTGF |
.EGKKQPPR.HNLKPRDLNVLTPTGF | |
Retrocopy | TEGKKQPPRVHNLKPRDLNVLTPTGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 119 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 93 .15 RPM |
SRP007412_heart | 0 .06 RPM | 15 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 265 .77 RPM |
SRP007412_liver | 0 .00 RPM | 28 .52 RPM |