RetrogeneDB ID: | retro_dnov_976 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_129042:4..830(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1191 | ||
Ensembl ID: | ENSDNOG00000002676 | ||
Aliases: | None | ||
Description: | KIAA1191 [Source:HGNC Symbol;Acc:29209] |
Percent Identity: | 83.15 % |
Parental protein coverage: | 90.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASRHPEVPALEPSGPLGKMSLPIGMYRRAFSYDDALEDPTPMTPPPSDMGSIPWKPVIPERKYQHLAKV |
M.SR.PEVPALEPS.PLGKMS.PIGMY..AFSYDDAL.DP.PMTP..SD.GSIPWK..IPE.KYQHLA.V | |
Retrocopy | MISRQPEVPALEPSWPLGKMSPPIGMYCWAFSYDDALKDPMPMTPS-SDTGSIPWKTMIPEHKYQHLAEV |
Parental | EEGEASASSPAVTPSPATDSVDKVPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYT-PHKGLT |
EEGEAS.SSPAVTPSPAT.SVDKVPVVKAKATHVIMSSLITKQ.QESIQ.FEQ.AGLRDA.YT...KGLT | |
Retrocopy | EEGEASVSSPAVTPSPATGSVDKVPVVKAKATHVIMSSLITKQIQESIQYFEQ*AGLRDADYT<TYKGLT |
Parental | TEDTKYLRMAEALHKLKLQSGEIIKEEKQPASAQSTPSSTPHSSPKQKARGWFTSGSSTALPGPNSSIMD |
TEDTKY.RMAEA.HKLKLQ.GEIIKEEKQPASA.STP.S.PHSSP.Q..RGWFTSGSSTALPGPNSSI.D | |
Retrocopy | TEDTKYPRMAEAFHKLKLQNGEIIKEEKQPASAPSTPNSIPHSSPEQEPRGWFTSGSSTALPGPNSSIVD |
Parental | SRSGDKDRNSSEKWSLFGQRSLQKSDSGGFATQVYRGAQKPS-PMELIRVQATRMAEDPAVFKPPKMDV |
SRSGD.DRNSSEKWSLFG.RSLQKSDSGGFAT..Y.GAQKPS.P...I.VQAT.MAED.AVFK.PKMDV | |
Retrocopy | SRSGDTDRNSSEKWSLFGPRSLQKSDSGGFAT*AYTGAQKPS<PEGWIHVQATCMAEDLAVFKLPKMDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 65 .73 RPM |
SRP012922_cerebellum | 0 .00 RPM | 56 .36 RPM |
SRP012922_heart | 0 .00 RPM | 76 .57 RPM |
SRP012922_kidney | 0 .00 RPM | 96 .92 RPM |
SRP012922_liver | 0 .00 RPM | 42 .26 RPM |
SRP012922_lung | 0 .00 RPM | 46 .58 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 84 .47 RPM |
SRP012922_spleen | 0 .00 RPM | 44 .64 RPM |