RetrogeneDB ID: | retro_rnor_969 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:72865352..72866101(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | P33MONOX | ||
Ensembl ID: | ENSRNOG00000017133 | ||
Aliases: | None | ||
Description: | Putative monooxygenase p33MONOX [Source:UniProtKB/Swiss-Prot;Acc:Q5U2R6] |
Percent Identity: | 78.46 % |
Parental protein coverage: | 96.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | TWAASP-WKPVIPERKYQHLDKTEEGAASVSSLAVTPSTATDSSDKAPVVKAKATHIIMNSLITKQTQES |
TWAAS..WKPVIPE.KYQHLDKTE.GAASVSSL.VT..TA.DSSDKAPV..AKA...IMNSLITK.TQE. | |
Retrocopy | TWAASS<WKPVIPEYKYQHLDKTEKGAASVSSLSVTSWTAADSSDKAPVMRAKA--FIMNSLITKPTQEN |
Parental | IQRFEQQAGLRDAGYTP-HKGLTTEETKYLRVAEALHKLKLQSGETTREEKHPASAQSSPSSTPHSSPKQ |
IQRFEQ.AGLRD.GYTP.HKGLTTEET.YLRVAE.LHK.KL.SGE...EEKHPA.AQS..SSTP.SSPKQ | |
Retrocopy | IQRFEQ*AGLRDVGYTP<HKGLTTEETRYLRVAEELHKRKLKSGEIAKEEKHPATAQSTLSSTPRSSPKQ |
Parental | KSRGWFPSGSSTALPAPNPHSMDPGGGNDRNSADKWSLFGP-RPLQKSDSGFAIQAYKG-APKPSPMEVM |
KSRGWFPS.SSTALPAPNPH.MDPG..ND.NS..K...FGP.RPLQKSD.GFA.QAY.G.APKPSP.EVM | |
Retrocopy | KSRGWFPSASSTALPAPNPHTMDPGSRNDKNSENK--NFGP<RPLQKSDPGFAVQAYRG>APKPSPVEVM |
Parental | RAQATRAGE-DPAVFKPPKMDVPVVEGKKQPPRTHNLKPRDLNVLTPTGF |
RA.AT..GE...AVFKPPK.DVP.VEGKKQPPRTHNLKPRD.NVLT..GF | |
Retrocopy | RA*ATQ-GE>GTAVFKPPKRDVPTVEGKKQPPRTHNLKPRDWNVLTRAGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 111 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 478 .85 RPM |
SRP017611_liver | 0 .00 RPM | 21 .05 RPM |