RetrogeneDB ID: | retro_mdom_751 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:325202450..325203270(+) | ||
Located in intron of: | ENSMODG00000018548 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000005274 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.84 % |
Parental protein coverage: | 90.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PIGMHRRAFSYDDVLEDPTPMTPPSSDMCSKVLWKKPVIPDRKYQQLSKVEDGETSLSSPSITPSASSDQ |
PIG.H..AFSYDDVLEDPTPMTPPSSDMCSKVLWKK.VIPD.KYQQLSKVEDGETSL.SPSITPSASSDQ | |
Retrocopy | PIGTHHPAFSYDDVLEDPTPMTPPSSDMCSKVLWKKKVIPDHKYQQLSKVEDGETSLCSPSITPSASSDQ |
Parental | MNKVPVVKAKATHVIMNSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEEAKYHRVAEAVHKLKLQNG |
MNKVP.VKAKAT.VI.NSLITKQTQESI.RFEQQAGLR...Y.P.....TE.AKYHRV.EAVHKLKLQ.G | |
Retrocopy | MNKVPGVKAKATQVILNSLITKQTQESILRFEQQAGLRGRIYAP*RP-HTEGAKYHRVVEAVHKLKLQHG |
Parental | EITKDDRLTVSAQSTPSSTPHSSPRQKPRGWFAHGSSNSLPG-LDISNMDSGNGDRDKPSSEKWSLFGPR |
EITKDDRLTVSAQSTPSSTPHSSPRQKPRGWFAHGSS.SL.G.........G..D...PSSEKWSLFGPR | |
Retrocopy | EITKDDRLTVSAQSTPSSTPHSSPRQKPRGWFAHGSSHSLLG>ISRMDSGNGDKDK--PSSEKWSLFGPR |
Parental | TLQKSDSGFSIQSYRGTQKPLPVELIRAQATRIAEDPAAFKPPKMDLPGMEGKKPAPRVHNLKPRDM |
TLQKSDSGFSIQSYRGTQKP.PVELIRAQATRIAEDPAAFKPPKM.LP.MEGKKPA.RVHNLKPRDM | |
Retrocopy | TLQKSDSGFSIQSYRGTQKPSPVELIRAQATRIAEDPAAFKPPKMGLPVMEGKKPASRVHNLKPRDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 59 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 62 .68 RPM |
SRP007412_heart | 0 .00 RPM | 245 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 381 .88 RPM |
SRP007412_liver | 0 .00 RPM | 60 .92 RPM |
SRP007412_testis | 0 .00 RPM | 76 .41 RPM |